International Journal |
| 1. Leila Momajadi, Hossein Khanahmad, Karim Mahnam, Designing a multi-epitope influenza vaccine: An immunoinformatics approach , |
| 2. Saghi Sepehri , Ghazaleh Farhadi , Maryam Maghbul , Farough Nasiri, Mohammad Ali Faramarzi , Karim Mahnam , Somayeh Mojtabavi , Mohammad Mahdavi, Zhaleh Moharrami Oranj, A new route to the synthesis of ۲-hydrazolyl-۴-thiazolidinone hybrids, evaluation of ?-glucosidase inhibitory activity and molecular modeling insights , |
| 3. Sara Kafi , Sajad Najafi , Karim Mahnamd, Shirin Farivar , Javad Ranjbari, Virtual screening and experimental analysis of caspase-۷ inhibitors as candidates for extending the lifespan of CHO cells , |
| 4. Farzaneh Salmani , Marjan Mohammadi , Roozbeh Seif , Seyyed Hossein Khatami , Shokoofeh Noori , Hessam Sepasi Tehrani , Gholamhossein Riazi , Saeed Balalaie , Ali Akbar Moosavi-Movahedi , Atousa Moghadam Fard , Karim Mahnam , Aliasghar Keramatinia , , Lysine ?-aminolysis and incorporation of sulfhydryl groups into human brain tau ۴R/۱N and ۳۰۶VQIVYK۳۱۱ enhances the formation of beta structures and toxicity , |
| 5. Maryam Abbasi, Mahboubeh Mansourian, Afsaneh Arefi Oskouie, Salman Taheri, and Karim Mahnam, n-silico study MM/GBSA binding free energy and molecular dynamics simulation of some designed remdesivir derivatives as the inhibitory potential of SARS-CoV-۲ main protease , |
| 6. Ali Mehri, Karim Mahnam, Hajar Sirous, Mahmoud Aghaei, Leila Rafiei, Mahboubeh Rostami, Dihydropyrimidine derivatives as MDM۲ inhibitors , |
| 7. Maryam Beheshti Isfahani, Karim Mahnam, Hooria Seyedhosseini-Ghaheh, Hamid Mir Mohammad Sadeghi, Hossein Khanahmad, Vajihe Akbari, and Jaleh Varshosaz, Computational design of newly engineered DARPins as HER۲ receptor inhibitors for breast cancer treatment , |
| 8. Parisa Sadeghi, Karim Mahnam, Azhar Salari-Jazi, Ashok Aspatwar & Jamshid Faghri, Evolutionary Trajectories of Beta-Lactamase NDM and DLST Cluster in Pseudomonas aeruginosa: Finding the Putative Ancestor , |
| 9. Soheila Molaei, Ghazaleh Farhadi, Mina Talezari, Negin Gholizadeh, Karim Mahnam, Ali Keivanloo & Saghi Sepehri, One-pot synthesis of polyhydroquinoline-۱,۲,۳-triazole hybrids in deep eutectic solvent as anti-leishmanial agents and molecular modeling studies , |
| 10. Pardis Mohammadi pour, Karim Mahnam, Mahsa Taherzadeh, Shahrzad Ahangarzadeh, Abbas Alibakhsh, and Elmira Mohammadi, The effect of mutation on neurotoxicity reduction of new chimeric reteplase, a computational study , |
| 11. Karim Mahnam & Seyed Mehdi Rajaee, A Theoretical Survey to find Potential Natural Compound for Inhibition of Binding the RBD domain to ACE۲ Receptor Based on Plant Antivirals , |
| 12. Samaneh Hatami, Hajar Sirous, Karim Mahnam, Aylar Najafipour, and Afshin Fassihi, Preparing a database of corrected protein structures important in cell signaling pathways , |
| 13. Sajad Najafi, Abbas Alibakhshi, Karim Mahnam, Javad Ranjbar, Docking study on caspase ۳ inhibitors as potential drugs for traumatic brain cell apoptosis , Letters in Drug Design & Discovery |
| 14. Samaneh Hatami, Hajar Sirous, Karim Mahnam, Aylar Najafipour, and Afshin Fassihi, Preparing a database of corrected protein structures important in cell signaling pathways , Research in Pharmaceutical Sciences |
| 15. Karim Mahnam & Seyed Mehdi Rajaee, A Theoretical Survey to find Potential Natural Compound for Inhibition of Binding the RBD domain to ACE۲ Receptor Based on Plant Antivirals , Journal of Biomolecular Structure and Dynamics |
| 16. Pardis Mohammadi pour, Karim Mahnam, Mahsa Taherzadeh, Shahrzad Ahangarzadeh, Abbas Alibakhsh, and Elmira Mohammadi, The effect of mutation on neurotoxicity reduction of new chimeric reteplase, a computational study , Research in Pharmaceutical Sciences (RPS) |
| 17. Soheila Molaei, Ghazaleh Farhadi, Mina Talezari, Negin Gholizadeh, Karim Mahnam, Ali Keivanloo & Saghi Sepehri, One-pot synthesis of polyhydroquinoline-۱,۲,۳-triazole hybrids in deep eutectic solvent as anti-leishmanial agents and molecular modeling studies , Journal of Biomolecular Structure and Dynamics |
| 18. Parisa Sadeghi, Karim Mahnam, Azhar Salari-Jazi, Ashok Aspatwar & Jamshid Faghri, Evolutionary Trajectories of Beta-Lactamase NDM and DLST Cluster in Pseudomonas aeruginosa: Finding the Putative Ancestor , PATHOGENS AND GLOBAL HEALTH |
| 19. Karim Mahnam , Mostafa Shakhsi-Niaei,*, Maryam Ziaei , Karen . Sweazea, In silico evaluation of the downstream effect of mutated glucagon is consistent with higher blood glucose homeostasis in Galliformes and Strigiformes , Gen Comp Endocrinol |
| 20. Zahra Ghobadi , Karim Mahnam,*, Mostafa Shakhsi-Niaei, In-silico design of peptides for inhibition of HLA-A*03-KLIETYFSK complex as a new drug design for treatment of multiples sclerosis disease , Journal of Molecular Graphics and Modelling |
| 21. Nima Razzaghi-Asl, Sahar Mirzayi, Karim Mahnam, Vahed Adhami, and Saghi Sepehri, In silico screening and molecular dynamics simulations toward new human papillomavirus 16 type inhibitors , Research in Pharmaceutical Science |
| 22. Saghi Sepehri , Niloufar Hashemidanesh, Karim Mahnam, Hila Asham, Qualitative and Quantitative Analysis of Anti-viral Compounds against SARS-CoV-2 Protease Enzyme by Molecular Dynamics Simulation and MM/PBSA Method , Pharmaceutical Sciences |
| 23. Zohreh Bakherad , Hamid Bakherad , Saghi Sepehri , Mohammad Ali Faramarzi , Karim Mahnam , Somayeh Mojtabavi , Mohammad Mahdav, In silico and in vitro studies of thiosemicarbazone-indole hybrid compounds as potent α-glycosidase inhibitors , Computational Biology and Chemistry |
| 24. Fahimeh Ghasemi, Elham Jafari, Mahmoud Mirzaei, Karim Mahnam, Docking and Qsar Studies of Some Quinazolinone Derivatives as Possible Inhibitors of Thyrosine Kinase , Turkish Computational and Theoretical Chemistry |
| 25. Azhar Salari-jazi, Karim Mahnam, Parisa Sadeghi, Mohamad Sadegh Damavandi & Jamshid Faghri , Discovery of Potential Inhibitors Against New Delhi Metallo-?-Lactamase-۱ From Natural Compounds: In Silico-Based Methods , |
| 26. Saghi Sepehri , Niloufar Hashemidanesh, Karim Mahnam, Hila Asham , Qualitative and quantitative analysis of anti-viral compounds against SARS-CoV-2 protease enzyme by molecular dynamics simulation and MM/PBSA method , |
| 27. Karim Mahnam*, Maryam Lotfi, Farzaneh Ahmadi Shapoorabadi, Examining the Interactions Scorpion Venom Peptides (HP1090, Meucin-13, and Meucin-18) with the Receptor Binding Domain of the Coronavirus Spike Protein to design a Mutated Therapeutic Peptide , |
| 28. Karim Mahnam, Zahra Ghobadi, Finding a prospective dual-target drug for the treatment of coronavirus disease by theoretical study , |
| 29. Sara Eskandari, Abolfazl Barzegar, Karim Mahnam, Absorption of daunorubicin and etoposide drugs by hydroxylated and carboxylated carbon nanotube for drug delivery: Theoretical and experimental studies , |
| 30. Meysam Soleimani , Karim Mahnam , Hamid Mirmohammad-Sadeghi, Hojjat Sadeghi-Aliabadi, and Ali Jahanian-Najafabadi, Theoretical design of a new chimeric protein for the treatment of breast cancer , |
| 31. Mahboubeh Mansourian, Karim Mahnam, Hamid Reza Rajabi, MahmoudRoushani , Amir Hossein Doustimotlagh, Exploring the binding mechanism of saccharin andsodium saccharin to promoter of human p53 geneby theoretical and experimental methods , |
| 32. Nasrin Payab, Karim Mahnam, and Mostafa Shakhsi-Niaei, Computational comparison of two new fusion proteins for multiple sclerosis , |
| 33. Alireza Mansouri ,Karim Mahnam, Designing new surfactant peptides for binding to carbon nanotubes via computational approaches , |
| 34. Mahboubeh Mansourian, Lotfollah Saghaie, Afshin Fassihi, Armin Madadkar-Sobhani, Karim Mahnam, Linear and nonlinear QSAR modeling of 1,3,8-substituted-9-deazaxanthines as potential selective A2BAR antagonists , |
| 35. Elham Jafari , Ali Gheysarzadeh, Karim Mahnam , Rezvan Shahmohammadi, Amir Ansari, Hadi Bakhtyari and Mohammad Reza Mofid, n silico interaction of insulin-like growth factor binding protein 3 with insulin-like growth factor 1 , |
| 36. B. Saffar, A. Mehri Ghahfarrokhi, K. Mahnam , M. Mobini-Dehkordi, Improvement of Cd2+ uptake ability of SmtA proteinby Lys/Cys mutation; experimental and theoreticalstudies , |
| 37. Karim Mahnam, Samira Foruzandeh, Neda Mirakhorli & Behnaz Saffar, Experimental and theoretical studies of cadmiumions absorption by a new reduced recombinantdefensin , |
| 38. Maryam Farrokhnia, Karim Mahnam, Molecular Dynamics and Docking Investigations of Several Zoanthamine-Type Marine Alkaloids as Matrix Metaloproteinase-1 Inhibitors , |
| 39. K. Mahnam, A.A. Moosavi-Movahedia, H. Bahrami, G. Hossein HakimelahiG. Ataiea, S. Jalili , A.A Saboury, F. Ahmad, S. Safariana, M. Amanloufan B. Moshiri, Efficient Factors in Protein Modification: Adenosine Deaminase Esterification by Woodward Reagent K , |
| 40. KARIM MAHNAM, HOMAYOON BAHRAMI, ALI AKBAR MOOSAVI-MOVAHEDI, ALI AKBAR SABOURY, MEHDI IRANMANESH, GHOLAM HOSSEIN HAKIMELAHI ,MOHAMMAD NAVID SOLTANI RAD and ALI KHALAFI-NEZHAD, A THEORETICAL INVESTIGATION OF MECHANISM OFTHE ADENOSINE DEAMINASE MODIFICATION:REACTION OF GLUTAMATE RESIDUE WITHWOODWARD REAGENT K , |
| 41. DAVOOD AJLOO, ALI A. SABOURY, NILOOFAR HAGHI-ASLI, GHASEMATAEI-JAFARAI, ALI A. MOOSAVI-MOVAHEDI, MOSAYEB AHMADI,KARIM MAHNAM, SAEED NAMAKI, Kinetic, thermodynamic and statistical studies on the inhibitionof adenosine deaminase by aspirin and diclofenac , |
| 42. Mohsen Shahlaei, Armin Madadkar-Sobhani, Karim Mahnam, Afshin Fassihi , Lotfollah Saghaie, Mahboubeh Mansourian, Homology modeling of human CCR5 and analysis of its binding properties throughmolecular docking and molecular dynamics simulation , |
| 43. Nima Razzaghi-Asla, Sahar Mirzayia, Karim Mahnamb, Saghi Sepehri, Identification of COX-2 inhibitors via structure-based virtual screeningand molecular dynamics simulation , |
| 44. Mahboubeh Mansourian, Afshin Fassihi, Lotfollah Saghaie, Armin Madadkar-Sobhani, Karim Mahnam , Maryam Abbasi, QSAR and docking analysis of A2Badenosine receptor antagonists based onnon-xanthine scaffold , |
| 45. Mahboubeh Mansourian, Karim Mahnam, Armin Madadkar-Sobhani,Afshin Fassihi , Lotfollah Saghaie, Insights into the human A1 adenosinereceptor from molecular dynamicssimulation: structural study in the presenceof lipid membrane , |
| 46. Mohammad Mahmoudzadeh , Afshin Fassihi, Farid Dorkoosh, Reyhaneh Heshmatnejad, Karim Mahnam, Hassan Sabzyan, Amir Sadeghi, Elucidation of Molecular Mechanisms Behind the Self-AssemblyBehavior of Chitosan Amphiphilic Derivatives ThroughExperiment and Molecular Modeling , |
| 47. Oveis Karima, Gholamhossein Riazi, Sirus Khodadadi, Reza Yousefi, Karim Mahnam ,Farzad Mokhtari, Tayebe Cheraghi, Elham Hoveizi, Ali Akbar Moosavi-Movahedi, An in vitro study of the role ofb-boswellic acid in the microtubuleassembly dynamics , |
| 48. Hamed Hosseinian, Karim Mahnam, Mostafa Shakhsi-Niaei, The c.305del3 inIL-2gene in Homonoidea theoretically affects IL-2/IL-2Rαinteraction as well as lymphocyte homeostasis , |
| 49. Karim Mahnam , Azadeh Hoghoughi, Theoretical investigation of fingolimod and cladribinebinding to p53 gene in order to predication of probabilistic cause of carcinogenicity of them , |
| 50. Elmira Mohammadi, Hooria Seyedhosseini‑Ghaheh, Karim Mahnam, Ali Jahanian‑Najafabadi, Hamid Mir Mohammad Sadeghi, Reteplase: Structure, Function, and Production , |
| 51. Elmira Mohammadi, Karim Mahnam, Ali Jahanian-Najafabadi & Hamid MirMohammad Sadeghi, Design and production of new chimeric reteplasewith enhanced fibrin affinity: a theoretical andexperimental study , |
| 52. A. Barkhordari , K. Mahnam, H. Mirmohammad-Sadegh, Designing a new bispecific tandem single-chain variablefragment antibody against tumor necrosis factor-αand interleukin-23 using in silico studies for the treatmentof rheumatoid arthritis , |
| 53. Karim Mahnam, Fatame Raisi, A theoretical and experimental study of calcium, iron, zinc,cadmium, and sodium ions absorption by aspartame , |
| 54. Karim Mahnam, Amir Sadeghi, Mehrdad Mohammadpour , Afshin Fassihi, Theoretical studies of 1,4-dihydropyridine-3,5-dicarboxamidesas possible inhibitors ofMycobacterium tuberculosisenoylreductase , |
| 55. Zainab Moosavi-Movahedi,, Homayoon Bahrami, Mansour Zahedi, Karim Mahnam, Jamshid Chamani, Shahrokh Safarian, Ali A. Saboury, Ali A. Moosavi-Movahedi, A theoretical elucidation of bilirubin interaction with HSA's lysines: Firstelectrostatic binding site in IIA subdomain , |
| 56. K. Mahnam, B. Saffar, M. Mobini-Dehkordi, A. Fassihi and A. Mohammadi, Design of a novel metal binding peptide by molecular dynamics simulation to sequester Cu and Zn ions , |
| 57. Mohammad N. SarboloukiKarim MahnamHossain-Ali Rafiee-Pour, Determination of pore/protein sizeviaelectrophoresis and slit sieve model , |
| 58. Hossein Mohammadian , Karim Mahnam , Hamid Mirmohammad Sadeghi , Mohamad Reza Ganjalikhany, and Vajihe Akbari, Rational design of a new mutant of tobacco etch virus protease in order to increase the in vitro solubility , |
| 59. Mahboubeh Mansourian&Armin Madadkar-Sobhani&Karim Mahnam&Afshin Fassihi&Lotfollah Saghaie, Characterization of adenosine receptor in its nativeenvironment: insights from molecular dynamics simulationsof palmitoylated/glycosylated, membrane-integrated humanA2Badenosine receptor , |
| 60. H. R. Saeidi, Lohrasebi , K. Mahnam, External electric field effects on the mechanical propertiesof theαβ-tubulin dimer of microtubules: a molecular dynamicsstudy , |
| 61. Fatemeh Ghanavatinejad, Zahra Pourteymourfard‐Tabrizi, Karim Mahnam, Abbas Doosti ,Ameneh Mehri‐Ghahfarrokhi , Masoumeh Pourhadi, Sayedeh Azimeh Hosseini ,Morteza Hashemzadeh Chaleshtori , Payam Soltanzadeh and Mohammad‐Saeid Jami, In silico and in vitro effects of the I30T mutation on myelin proteinzero instability in the cell membrane , |
| 62. B. Saffar, A. Mehri Ghahfarrokhi, K. Mahnam & M. Mobini-Dehkordi, Improvement of Cd2+ uptake ability of SmtAprotein by Lys/Cys mutation; experimental andtheoretical studies , |
| 63. Valiollah Hajhashemi, Mustafa Ghanadian, Abbasali Palizaban,Karim Mahnam, Hamed Eshaghi, Bahareh Gheisari, HojjatSadeghi-Aliabadi, Cycloarta-23-ene-3beta,25-diol a pentacyclic steroid fromEuphorbiaspinidens, as COX inhibitor with molecular docking, andin vivostudy ofits analgesic and anti-inflammatory activities in male Swiss mice andWistar rats , |
| 64. Fatemeh Mohammadi-Milasi, Karim Mahnam & Mostafa Shakhsi-Niaei, In silico study of the association of the HLA-A*31:01 allele (human leucocyte antigen allele31:01) with neuroantigenic epitopes of PLP(proteolipid protein), MBP (myelin basic protein)and MOG proteins (myelin oligodendrocyteglycoprotein) for studying , |
| 65. Abolfazl Barzegar, Ali A. Moosavi-Movahedi, Karim Mahnam, Saman Hosseini Ashtiani, Chaperone-like activity ofa-cyclodextrin via hydrophobic nanocavityto protect native structure of ADH , |
| 66. ABOLFAZL BARZEGAR, ALI AKBAR MOOSAVI-MOVAHEDI, KARIM MAHNAM, HOMAYOON BAHRAMI and NADER SHEIBANI, Molecular dynamic simulations of nanomechanicchaperone peptide and effects ofin silicoHis mutations onnanostructured function , |
| 67. Fatemeh Banisharif-Dehkordi, Mohsen Mobini-Dehkordi, Mostafa Shakhsi-Niaei and Karim Mahnam, Design and molecular dynamic simulation of a new double-epitope tolerogenic protein as a potential vaccine for multiple sclerosis disease , |
| 68. Davood Ajlooa, Elias Taghizadeha, Ali. A. Sabouryb, Elahe Bazyaria, Karim Mahnam, Effects of surfactant, salt and solvent on the structure and activity of adenosinedeaminase: Molecular dynamic and spectrophotometric studies , |
Research Journal |
| 69. Karim Mahnam, Mahtab Zarean & Zahra Ghobadi, Lasioglossin-۱ peptide inhibits binding of spike protein of SARS-CoV-۲ to ACE۲ receptor: an in silico approach of some bee venom peptides , Nov 2023 |
| ٧٠. زهرا توکلي گارماسه، بهناز صفار، کريم مهنام, طراحي،کلونينگ، بيان و خالص سازي پپتيد هيستاتين ۳ جهش يافته و بررسي اثرات ضد ميکروبي آن , |
| ٧١. سوگند امیری فر، کریم مهنام, پیشگویی جهشهای پایدارکننده بالقوه پروتئین اینترفرون بتا-a1 (سینووکس) به وسیله شبیه سازی دینامیک مولکولی , |
| ٧٢. آذین مشرف قهفرخی ، حسینعلی رفیعی پور، کریم مهنام, مقایسه ساختار سه ایزوآنزیم گلوکوآمیلاز به منظورعوامل تعیین نشاندهنده گرمای پایداری پروتئینها با استفاده از شبیه سازی دینامیک مولکولی , |
| ٧٣. فاطمه میراحمدی باباحیدری و کریم مهنام , طراحی يک پپتيد چهار اسيدآمينه ای نوين برای مهار دومين BIR3 پروتئينXIAP به وسيله شبيه سازی ديناميک مولکولی , |
| ٧٤. کریم مهنام و نسرین پایاب, سایتوکاینهای پیش التهابی وروشهای مهارآنها , |